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Seminar WS05/06: Data Integration in Life Science Informatics
This seminar will discuss recent approaches to data integration with a
focus on the application in life science informatics (LSI). Especially in
LSI, data is available in multiple heterogeneous sources, but it has to be
integrated in a coherent and comprehensive way.
Organization
The seminar will be held in a compact form on two days at the end of
January/beginning of February 2006. In preparation of the presentation and
the seminar work, students have to hand in their intermediate results.
 | October 19, 2005 (11.30am): First meeting in the seminar room of
Informatik V
 | Introduction |
| Assignment of topics |
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| November 11, 2005: Abstract (1-page) of the seminar work |
| December 1, 2005: Initial draft (3-4 pages) of the seminar work,
containing structure and relevant literature |
| January 15, 2005: Final version of the seminar work (15-20 pages) |
| One week before presentation: slides for the presentation (45mins) |
Presentations have to be done in English. The seminar work can be
written in German or English.
Prerequisites
Students must be enrolled in one computer science programme (Diplom-Informatik,
SSE, or MI). Some background in database systems, knowledge
representation and/or LSI is helpful.
Topics
| Data Integration in LSI: An Overview |
| Integration of Semi-Structured Data and XML |
| Ontology-based Data Integration |
| Data Integration in Peer-to-Peer Systems |
| Schema Matching |
| AutoMed: Automatic Generation of Mediator Tools for Heterogeneous
Database Integration |
| Web Services and Life Science IDs |
| Open Microscopy Environment |
| Data Integration in Compound Screening |
| Data Integration in Image Databases |
| SRS and DiscoveryLink |
| BioKleisli |
Links
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